- JU Archives
- Jagiellonian Library
- MC Medical Library
- Jagiellonian Centre for Experimental Therapeutics
- Małopolska Centre of Biotechnology
- JU Museum
- Teacher Training Centre
- Jagiellonian University of the Third Age
- Jagiellonian Language Centre
- Postdiploma Medical Training Centre
- JU Sports Centre
- MC Sports Centre
- Synchrotron Radiation Centre "Solaris"
- Center for Quantitative Research in Political Science
- Jagiellonian Centre for Migration Studies
- JU Medical College Language Centre
- Natural Science Library
- The Jagiellonian University Polish Research Centre in London
- Jagiellonian Centre for African Studies
- Centre for Integrated Systems Development
- The Jagiellonian Centre for Interdisciplinary Studies on Culture
- Centre for Technology Transfer CITTRU
- Copernicus Center for Interdisciplinary Studies
- Jagiellonian Research Centre for Law, Language and Philosophy
- Experimental Farming Centre "Łazy"
- Nature Education Centre
- Jagiellonian University Press
- Centre for Digital Medicine and Robotics
- Jagiellonian Centre for Digital Humanities
- Centre for Brain Research
- Biobank of the Jagiellonian University - Medical College