Offices and officers subordinate to Rector

• Rector's Office
• JU Press Office
• JU Legal Team
• Internal Audit
• Protection of Confidential Information and Defence Affairs
• Board of Editors - Alma Mater monthly
• Committee for Jagiellonian University Museum Property
• Office of the Rector's Proxy for Cooperation within the framework of Una Europa
• Office of the Rector's Proxy for Strategic Projects

Offices and officers subordinate to Vice-Rector for Medical College

• Department of Human Resources, MC
• Medical College Attorneys
• University Hospitals
• Health and Safety Inspectorate, MC
• Fire Safety, MC
• Personal Data Protetion, MC
• Joint units of JU and MC
  • Internal Audit
  • Protection of Confidential Information and Defence Affairs

Offices and officers subordinate to Vice-Rector for International Relations

• Office of the Vice-Rector for International Relations
• International Relations Office
• Disability Support Service
• Sports Office
• ZintegrUJ Project Office
• Artistic Ensembles

Offices and officers subordinate to Vice-Rector for Educational Affairs

• Office of the Vice-Rector for Educational Affairs
• Centre for Academic Support
• Computer Network Department
• Office of IT Services
• University Website
• 'Perfect University - Integrated JU Development' Project Office

Offices subordinate to Vice-Rector for University Development

• Office of the Vice-Rector for University Development
• Office of Institutional Analysis

Offices subordinate to Vice-Rector for Human Resources and Financial Management

• Office of the Vice Rector for Human Resources and Financial Management
• Office of Human Resources
• Staff Benefits Office
• Public Procurement Office

Offices subordinate to Vice-Rector for Research

• Office of the Vice-Rector for Research
• Centre for Project Administrative Support

Offices and officers subordinate to Chancellor

• Chancellor's Office
• Office of Inventory Management
• Department of Operations
• Centre for Communications and Marketing
• Department of Supply
• Health and Safety Inspectorate
• Fire Safety Inspectorate
• Staff Assistance Fund
• Rector's Guard
• Security and Safety
• Student Centre for Support and Adaptation
• Deperment of Security, Safety and Equal Treatment

Offices and officers subordinate to Deputy Chancellor for Real Estate Management

• Office of the Deputy Chancellor for Real Estate Management
• Administration Office for the Campus of the 600th Anniversary of the JU Revival
• Office of Real Estate Management

Offices and officers subordinate to Deputy Chancellor for Technology and Investments

• Office of the Deputy Chancellor for Technology and Investments
• Department of Maintenance
• Department of Construction Projects
• Department of Renovation
• Telecommunications

Offices and officers subordinate to Deputy Chancellor for Medical College

• MC Office of Operations and Marketing
• MC Office of Public Procurement
• MC IT Centre
• MC Department of Supply
• MC Department of Resources Management
• MC Department of Construction, Renovation and Maintenance

Offices and officers subordinate to Bursar

• Bursar's Office
• Analysis and Reporting Manager
• Manager of Procedure Optimisation
• Department of Budget, Control and Analysis
• Tax Unit

Offices and officers subordinate to Deputy Bursar for Finances

• Department of Finances
• Verification and Financial Control Unit

Offices and officers subordinate to Deputy Bursar for Accounting

• Department of Property Records
• Department of Accounting
• Department of Domestic Projects Financial Management

Offices and officers subordinate to Deputy Bursar for Medical College

• MC Department of Finance and Property Records
• MC Department of Accounting

Offices and officers subordinate to Deputy Bursar for Structural Funds and International Programmes

• Department of Structural Projects Financial Mangement
• Department of Foreign Projects Financial Management